MmuEX7034022 @ mm10
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98098187-98107105:-
Coord C1 exon
chr7:98106992-98107105
Coord A exon
chr7:98102550-98102702
Coord C2 exon
chr7:98098187-98098371
Length
153 bp
Sequences
Splice sites
3' ss Seq
AAGCGCTATGCCCCCTGCAGGAA
3' ss Score
6.15
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGGGACTATGTATGGATGGACCTGAAGTCAGGCCAGGAGTTTGATGTGCCCATCGGGGCCGTGGTGAAGCTCTGCGACTCGGGCCAGATCCAGGTGGTGGATGATGAAGACAAT
Seq A exon
GAACACTGGATATCCCCTCAGAATGCCACGCACATCAAGCCAATGCACCCCACATCGGTGCACGGCGTGGAGGACATGATCCGCCTGGGGGATCTCAACGAGGCAGGCATCCTTCGAAACCTTCTCATTCGCTACCGGGACCACCTCATCTAT
Seq C2 exon
ACGTACACAGGTTCCATCCTGGTGGCCGTGAACCCCTACCAGCTGCTCTCCATCTACTCGCCAGAGCACATCCGCCAGTACACCAACAAGAAGATAGGGGAGATGCCCCCCCACATCTTCGCCATTGCTGACAACTGCTACTTCAACATGAAACGCAACAACCGGGACCAGTGCTGTATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'15-17,'15-12,16-17=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.157 C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(38.4=54.9)
C2:
PF0006316=Myosin_head=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGAGTTTGATGTGCCCAT
R:
CCGGTTGTTGCGTTTCATGTT
Band lengths:
247-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types