DreEX6084406 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22202074-22215789:+
Coord C1 exon
chr21:22202074-22202189
Coord A exon
chr21:22202337-22202489
Coord C2 exon
chr21:22215605-22215789
Length
153 bp
Sequences
Splice sites
3' ss Seq
ACAATATTCTCTTAATATAGGAG
3' ss Score
6.23
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
AGGGGGACTATGTCTGGTTGGACCTCAGAACAGACCATGAGTTTGACGTCCCTGTTGGTGCTGTGGTCAAATTTTGTGACTCGGGTCAAATCCAGGTCTTGGATGATGAAGGAAAG
Seq A exon
GAGCAACAGATCTCTCTTCAGAATGCAACGAACATCAAGCCCATGCACCCAACCTCCATTCACGGGGTGGAGGATATGATCCGCCTAGGGGACCTGAATGAAGCTGGGATTCTTAGAAATCTCCTGATTCGTTACAATGACAGAGTCATATAT
Seq C2 exon
ACATATACTGGATCAATCCTGGTAGCGGTGAATCCATACCAGCTTCTGCCCATCTACACCCCCGATCAGATCCGGCTCTACACCAACAAAAAGATCGGAGAGATGCCGCCGCACATCTTTGGCATTGCAGACAACTGCTACTTCAGCATGCAAAGAAACAAGAAGGACCAGTGCTGCATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.077 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(4.3=53.8)
C2:
PF0006316=Myosin_head=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGACGTCCCTGTTGGTG
R:
GCAGCACTGGTCCTTCTTGTT
Band lengths:
254-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]