GgaEX1038168 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192406320-192414498:-
Coord C1 exon
chr1:192414385-192414498
Coord A exon
chr1:192413169-192413321
Coord C2 exon
chr1:192406320-192406504
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCGTTCTCTTCCCAGGAG
3' ss Score
11.19
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGGGATTATGTGTGGATGGACCTCAAAACCGGTCGGGAATTCGATGTTCCCATTGGAGCGGTGGTTAAACTGTGTGACTCTGGGCAGATCCAAGTTGTGGATGATGAAGGCAAT
Seq A exon
GAGCACTGGATTTCCCCGCAGAATGCCAGCCACATCAAACCCATGCACCCCACCTCCATCCATGGAGTGGAGGACATGATCCGGCTGGGGGACTTGAATGAGGCAGGAATCCTTAGGAACCTGCTGATCCGCTACCGGGAGCATCTCATCTAT
Seq C2 exon
ACATACACTGGTTCAATACTGGTGGCAGTAAACCCCTACCAGCTTCTACCCATCTATTCACCGGAGCAGATCCGCCTGTACACCAACAAAAAGATTGGGGAAATGCCACCACACATCTTTGCGATCGCTGACAACTGCTACTTCAACATGCAGCGCAACAACAAGGATCAGTGTTGTATCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'4-7,'4-5,5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(4.2=54.9)
C2:
PF0006316=Myosin_head=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCGGTCGGGAATTCGATG
R:
GTTGTTGCGCTGCATGTTGAA
Band lengths:
251-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]