DreEX0048763 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3109790-3116582:+
Coord C1 exon
chr18:3109790-3109903
Coord A exon
chr18:3113060-3113212
Coord C2 exon
chr18:3116398-3116582
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGAATTTGCATTATTTCCAGGAA
3' ss Score
7.38
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGGGATTATGTCTGGCTGGACCTGAAGACGGGTCATGAGTTTGAGGTCCCGATCGGAGCTGTGGTGAAGCTCTGTGATTCTGGACAGATTCAAGTTCTGGATGATGAAGGAAAT
Seq A exon
GAACACTGGATCTCTCCTCAAAATGCCACCAACATCAAGCCGATGCACCCGACCTCCATTCACGGTGTGGAAGACATGATCCGGCTGGGGGATCTGAACGAGGCGGGAATCCTCCGAAATCTGCTCATCCGATACAGAGAACACCTCATCTAT
Seq C2 exon
ACGTATACGGGGTCCATCTTAGTGGCCGTCAACCCGTATCAGCTGCTTCCCATTTACACAGCAGACCAGATTCGCCTTTACACCAATAAAAAGATTGGAGAAATGCCTCCACACATCTTCGCCATCGCAGACAACTGCTATTTCAACATGCAGCGCAACAACAAAGACCAGTGCTGCATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'3-3,'3-1,4-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(4.2=54.9)
C2:
PF0006316=Myosin_head=FE(9.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCATGAGTTTGAGGTCCCG
R:
CACTGGTCTTTGTTGTTGCGC
Band lengths:
257-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]