RnoEX6003816 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163049756-163059391:-
Coord C1 exon
chr1:163059278-163059391
Coord A exon
chr1:163054847-163054999
Coord C2 exon
chr1:163049756-163049940
Length
153 bp
Sequences
Splice sites
3' ss Seq
AAGGGCTATGTTCCCTGCAGGAA
3' ss Score
7.8
5' ss Seq
TACGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GGGGACTACGTGTGGATGGACCTGAAGTCGGGCCAGGAGTTCGATGTGCCCATCGGGGCCATGGTAAAGCTCTGTGAGTCTGGGCAGATCCAGGTGGTGGATGATGAAGGCAAT
Seq A exon
GAACACTGGATTTCCCCTCAAAATGCCACGCACATCAAGCCAATGCACCCCACATCGGTGCATGGTGTGGAGGACATGATCCGCCTGGGGGATCTCAACGAGGCAGGCATTCTTCGAAACCTTCTCATTCGCTACCGGGACCATCTCATCTAC
Seq C2 exon
ACATACACGGGTTCCATCCTGGTGGCCGTGAACCCCTACCAGCTGCTGTCCATCTACTCGTCAGAGCACATCCGCCAGTATACCAACAAGAAGATAGGGGAGATGCCCCCCCACATCTTTGCCATTGCCGACAATTGCTACTTCAACATGAAACGCAACAACCGGGACCAGTGCTGTATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'4-4,'4-2,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0006316=Myosin_head=PU(4.2=54.9)
C2:
PF0006316=Myosin_head=FE(9.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTACGTGTGGATGGACCT
R:
TGTCGGCAATGGCAAAGATGT
Band lengths:
245-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]