BtaEX0024824 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006686 | NPNT
Description
nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
Coordinates
chr6:20480041-20489952:-
Coord C1 exon
chr6:20489860-20489952
Coord A exon
chr6:20485275-20485367
Coord C2 exon
chr6:20480041-20480160
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTTCCTGGTGTGAAGACG
3' ss Score
2.53
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
CTGTGTGCCAGCCACAGTGCAAACATGGTGAATGTGTCGGGCCAAACAAGTGCAAGTGTCACCCTGGATTTGCCGGGAAGACCTGCAATCAAG
Seq A exon
ACGAGCACCTCTACCCAACTCCTCTTGACCAAGGCAGTGAACAGCCTCTTTTGCAACCCCCGGATCATCCAGCCACCAGTTTGCCTTCAAGGG
Seq C2 exon
ACCTAAACGAGTGTGGCCTGAAGCCGCGGCCCTGCAAGCACAGGTGCATGAACACTTTCGGCAGCTACAAGTGCTACTGTCTCAGTGGATACATGCTTCTGCCGGATGGGTCCTGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006686_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=PU(88.9=97.6),PF146701=FXa_inhibition=PU(4.9=4.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTGTCGGGCCAAACAA
R:
CCGGCAGAAGCATGTATCCAC
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development