MmuEX0032200 @ mm9
Exon Skipping
Gene
ENSMUSG00000040998 | Npnt
Description
nephronectin [Source:MGI Symbol;Acc:MGI:2148811]
Coordinates
chr3:132572860-132580517:-
Coord C1 exon
chr3:132580425-132580517
Coord A exon
chr3:132577337-132577429
Coord C2 exon
chr3:132572860-132572979
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTCCCCGCTGTGAAGATG
3' ss Score
4.67
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
CTGTGTGTCAACCACAGTGCAAACACGGAGAGTGCGTCGGGCCAAACAAGTGCAAATGTCACCCTGGATTTGCTGGGAAAACCTGCAACCAAG
Seq A exon
ATGAGTCCTTCCACCCAACTCCTCTTGACCAAGGCAGTGAACAGCCTCTTTTCCAACCCCCGGATCATCAAGCCACAAATGTACCTTCAAGGG
Seq C2 exon
ATTTAAACGAGTGTGGCCTGAAGCCTCGGCCCTGTAAGCACAGGTGCATGAACACTTTCGGCAGCTACAAGTGCTACTGTCTCAACGGATACATGCTGCTGCCAGACGGGTCCTGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040998_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.531 C2=0.000
Domain overlap (PFAM):
C1:
PF0236314=C_tripleX=PD(72.2=40.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=PU(80.0=97.6),PF146701=FXa_inhibition=PU(4.9=4.9)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAACCACAGTGCAAACAC
R:
CAGTAGCACTTGTAGCTGCCG
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types