GgaEX0015754 @ galGal4
Exon Skipping
Gene
ENSGALG00000010566 | NPNT
Description
nephronectin [Source:HGNC Symbol;Acc:HGNC:27405]
Coordinates
chr4:38021357-38028228:-
Coord C1 exon
chr4:38028136-38028228
Coord A exon
chr4:38026220-38026312
Coord C2 exon
chr4:38021357-38021476
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCCCATCATGTGAAGATG
3' ss Score
4.77
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
CTATATGCCAACCAGGATGCAAACACGGTGAATGCATTGGGCCAAACAAGTGCAAGTGCCACCCAGGATACACTGGAAAAACGTGCAATCAAG
Seq A exon
ATGAGCAACTGTATTCAAGTCGACCTGGTCAGAACAGTGAAGCACATCTATTCCGCCCCCTGGAGCATCATTCAAGAAATACACCTTCAAGGG
Seq C2 exon
ATCTAAACGAGTGTGGACTGAAGCCCCGGCCATGCAAACACCGGTGCATGAATACCTACGGCAGCTACAAGTGCTACTGTCTGAATGGCTACATGCTTCTGCCAGATGGAACGTGCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010566_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.152 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000017193fB1832
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAATGCATTGGGCCAAAC
R:
CGTTCCATCTGGCAGAAGCAT
Band lengths:
180-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]