GgaEX0015754 @ galGal3
Exon Skipping
Gene
ENSGALG00000010566 | NPNT
Description
NA
Coordinates
chr4:39961300-39968171:-
Coord C1 exon
chr4:39968079-39968171
Coord A exon
chr4:39966163-39966255
Coord C2 exon
chr4:39961300-39961419
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCCCATCATGTGAAGATG
3' ss Score
4.77
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
CTATATGCCAACCAGGATGCAAACACGGTGAATGCATTGGGCCAAACAAGTGCAAGTGCCACCCAGGATACACTGGAAAAACGTGCAATCAAG
Seq A exon
ATGAGCAACTGTATTCAAGTCGACCTGGTCAGAACAGTGAAGCACATCTATTCCGCCCCCTGGAGCATCATTCAAGAAATACACCTTCAAGGG
Seq C2 exon
ATCTAAACGAGTGTGGACTGAAGCCCCGGCCATGCAAACACCGGTGCATGAATACCTACGGCAGCTACAAGTGCTACTGTCTGAATGGCTACATGCTTCTGCCAGATGGAACGTGCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010566-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.176 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=40.6)
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=PU(88.9=97.6),PF146701=FXa_inhibition=PU(4.9=4.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAATGCATTGGGCCAAAC
R:
CGTTCCATCTGGCAGAAGCAT
Band lengths:
180-273
Functional annotations
There are 0 annotated functions for this event