DreEX0051327 @ danRer10
Exon Skipping
Gene
ENSDARG00000018721 | npnt
Description
nephronectin [Source:ZFIN;Acc:ZDB-GENE-090312-201]
Coordinates
chr1:49488093-49515112:+
Coord C1 exon
chr1:49488093-49488185
Coord A exon
chr1:49504202-49504294
Coord C2 exon
chr1:49514993-49515112
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTTTTCCCTCACTCCTAAAGACG
3' ss Score
4.01
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CGCTATGTCAGCACGGATGCAAGCACGGAGAATGCGTGGGACCCAACAAATGCAAGTGCCATCCAGGTTATACAGGAAAAACATGCAACCAAG
Seq A exon
ACGAGCGGGGCTTTGTTAGCCCTCCATTATGGCACAGTCACGCTCCTGTTTTTGTTCCAATGGACCACCAGCCGATCGCGGCGCCTTCAGAGG
Seq C2 exon
ACCTGAACGAGTGTGGCCTGAAGCCTCGTCCTTGTAAGCACCGCTGCATGAACACATTCGGGAGCTTCAAGTGTTACTGTCTGAATGGCTTCATGCTGCTGCCGGATGGGAGCTGCGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018721_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=WD(100=40.6),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=PU(88.9=97.6),PF146701=FXa_inhibition=PU(4.9=4.9)
Main Inclusion Isoform:
ENSDART00000158988fB4311
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCGTGGGACCCAACAAAT
R:
CATCCGGCAGCAGCATGAAG
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]