RnoEX0060722 @ rn6
Exon Skipping
Gene
ENSRNOG00000052873 | Npnt
Description
nephronectin [Source:MGI Symbol;Acc:MGI:2148811]
Coordinates
chr2:238030381-238038227:-
Coord C1 exon
chr2:238038135-238038227
Coord A exon
chr2:238034827-238034919
Coord C2 exon
chr2:238030381-238030500
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTCCCTGCCGTGAAGACG
3' ss Score
2.6
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
CTGTGTGCCAACCACAGTGCAAACACGGAGAGTGCGTCGGGCCAAACAAGTGCAAATGTCACCCTGGATTTGCTGGGAAAACCTGCAACCAAG
Seq A exon
ACGAGCCCTTCCACCCAACTCCTCTTGACCAAGGCAGTGAACAGCCTCTTTTCCAACCCCCGGATCATCAAGCCACAAGTGTACCTTCAAGGG
Seq C2 exon
ATTTAAACGAGTGTGGCCTGAAGCCTCGGCCCTGCAAGCACAGGTGCATGAACACCTTCGGCAGCTACAAGTGCTACTGTCTCAACGGATACATGCTGATGCCGGACGGGTCCTGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052873_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.531 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=PU(88.9=97.6),PF146701=FXa_inhibition=PU(4.9=4.9)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAACCACAGTGCAAAC
R:
CAGTAGCACTTGTAGCTGCCG
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]