BtaEX0025600 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004891 | OXNAD1
Description
Bos taurus oxidoreductase NAD-binding domain containing 1 (OXNAD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035090]
Coordinates
chr1:155020889-155048087:+
Coord C1 exon
chr1:155020889-155021064
Coord A exon
chr1:155035336-155035442
Coord C2 exon
chr1:155047946-155048087
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCATCATCTTTTGGTTCCAGGTC
3' ss Score
8.68
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AACAACTTATTTCATCAAAAGGGAGAAAGCACTGACATCTGAGAAAGGAGGGTGAATGAGCTCTCTTACCTTCCCATGTGCAGATTTTCCTCCATATTCAGACCACGGAAGGGCTAATCCACCAACCCGAAGGGGTTCACGGGCTGGGGAATAAAGGATCCTCACCCGTTACCTCC
Seq A exon
GTCGTTTCGGCAGCCAAGGTGTGTGGAGTGGCTAGCGAGTCCCCATCGGTGAAGAGGCTCTGCCTGCTCGTCGCCGATAAAGACTTTTCTTTTAAGGCCGGCCAGTG
Seq C2 exon
GGTTGACTTTTTTATCCCAGGAGTCTCTGTGGTTGGTGGGTTCTCAATATGCTCCAGCCCTAGGCTGCTGGAACAGGAGAGAATGATAGAACTGGCAGTGAAACATGCAAACCACCCTCCTGCTCTCTGGATCCACAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004891_MULTIEX1-5/6=4-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTCTTACCTTCCCATGTGC
R:
TGTGGATCCAGAGAGCAGGAG
Band lengths:
254-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development