RnoEX0062756 @ rn6
Exon Skipping
Gene
ENSRNOG00000019760 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:RGD Symbol;Acc:1311534]
Coordinates
chr16:8212957-8231724:+
Coord C1 exon
chr16:8212957-8213020
Coord A exon
chr16:8215815-8215921
Coord C2 exon
chr16:8231482-8231724
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCCAGACCTCTCTGCCTCAGGTC
3' ss Score
7.01
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CGTAATGAGATCCAGAAGGAAAACTGACCACCTAGAGAGAACCGCCACTGTCCTCCGCCGGGAG
Seq A exon
GTCATGGCTGCAGCTAAGGTGTGTGAGATCACTCACGAGTCTCCATCAGTGAAGAGCCTCCGTTTGCTTGTTGCTGATAAAGACTTTTCCTTCAAGGCTGGCCAGTG
Seq C2 exon
TGCACACTTGACTCAGAAGTGGCTCTCAGAGTAGGTGGAGAGTTCTTCTTTGACCCTCAGCCCACAGATGCCCCTCGAAACCTCGTCTTGATTGCTGGAGGGGTTGGGATTAACCCCCTGCTTTCTATCCTGCGCCACTCGGCAGATCTCCACCGGGACCACAAAGAAAAAAGGAGAGGCTATGATATAGGAACAATAAAACTGTTCTACAGCGCAAAGAACACCAGTGAACTCCTGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019760_MULTIEX1-2/5=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
PF0097019=FAD_binding_6=PU(43.8=88.9)
C2:
PF0097019=FAD_binding_6=PD(11.0=12.3),PF080307=NAD_binding_6=WD(100=70.4)
Main Skipping Isoform:
ENSRNOT00000026751fB10174
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGAGAACCGCCACTGTCC
R:
TGGTGTTCTTTGCGCTGTAGA
Band lengths:
258-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]