GgaEX0016904 @ galGal3
Exon Skipping
Gene
ENSGALG00000011239 | OXNAD1
Description
NA
Coordinates
chr2:34257522-34264636:+
Coord C1 exon
chr2:34257522-34257585
Coord A exon
chr2:34260258-34260364
Coord C2 exon
chr2:34264495-34264636
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTATTTTTCTTTTGTTTAGGTA
3' ss Score
10.02
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CACAATACAATCAAAAAGGAAAATGGATCACCTTGAGAGAACAGCAAATAATTTTCGCCAGGAG
Seq A exon
GTAATTTCACAAGCCAAAGTGTGTGGCATCACCAATGAATCAGAGACAGTCAAGAGACTACGTTTGGCCATCACAAATAAAGATTTTACTTTCAAAGCGGGACAGTG
Seq C2 exon
GGTTGATTTCTTTATTCCTGGCGTATCTGTGATTGGGGGATTCTCAATGTGTTCAAGCCCTGGTCTGCTGGAACGAGAAGGAGTGTTAGAGCTTGCAGTGAAGTACACTGACCATCCTCCTGCTCACTGGATCCACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239-'6-3,'6-2,7-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0097019=FAD_binding_6=PU(34.8=88.9)
C2:
PF0097019=FAD_binding_6=FE(51.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAAAGGAAAATGGATCACCTTGA
R:
TCAGTGTGGATCCAGTGAGCA
Band lengths:
195-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]