MmuEX0033355 @ mm9
Exon Skipping
Gene
ENSMUSG00000021906 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:MGI Symbol;Acc:MGI:1916953]
Coordinates
chr14:32905254-32909814:+
Coord C1 exon
chr14:32905254-32905317
Coord A exon
chr14:32908551-32908657
Coord C2 exon
chr14:32909673-32909814
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCCAGACCTCTCTGCTTCAGGTC
3' ss Score
8.02
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CATAATTAAATCCAGAAGGAAAACGGACCACCTAGAGAGAACTGCCAGTGTCCTCCGCCGGGAG
Seq A exon
GTCATGGCTGCAGCTAAGGTGTGTGAAATCACTCACGAGTCTCCATCAGTGAAGAGCCTCCGTTTGCTTGTTGCTGATAAAGACTTTTCCTTTAAGGCTGGCCAGTG
Seq C2 exon
GGTTGATTTCTTCATCCCAGGAGTCTCAGTGGTTGGTGGGTTTTCAATTTGCTCCAGTCCCCAACGGCTAGAACGAGACAGAATAATAGAACTGGCGGTGAAATATGCAGACCACCCTCCTGCTGTCTGGGTTCACAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021906_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
PF0097019=FAD_binding_6=PU(37.6=88.9)
C2:
PF0097019=FAD_binding_6=PD(53.5=80.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGGAAAACGGACCACC
R:
TTATTGTGAACCCAGACAGCAGG
Band lengths:
194-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: