DreEX0052967 @ danRer10
Exon Skipping
Gene
ENSDARG00000062664 | oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-199]
Coordinates
chr19:20690826-20698469:+
Coord C1 exon
chr19:20690826-20690889
Coord A exon
chr19:20692561-20692667
Coord C2 exon
chr19:20698328-20698469
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTTTGTGTACCCAGGAA
3' ss Score
9.14
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
AAAAATGACATCCAGGAGACGGACTGACCATCTAGAGAGAACTGCTAGTGTTCATCGACAAATG
Seq A exon
GAACTTTTCTCTGCACGTGTTTGTGACATTATTAGTGAATCTGATACTGTAAAGAGACTAAGACTGGAAGTGGCTCATCCTGACTTCAGCTTCCGTGCTGGACAGTG
Seq C2 exon
GGTGGATTTCTTCATCCCAGGTGTGGATACTGTGGGCGGTTTCTCCATTTGCTCAAGTCCAGGTCTGCTGAAGAGAGAAGGAGTGATTGAACTGGCTGTAAAATATGCGCGCCATCCTCCAGCACACTGGATTCACACCGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062664_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0097019=FAD_binding_6=PU(33.7=88.9)
C2:
PF0097019=FAD_binding_6=FE(49.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACATCCAGGAGACGGACT
R:
TTCGGTGTGAATCCAGTGTGC
Band lengths:
202-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]