MmuEX0033355 @ mm10
Exon Skipping
Gene
ENSMUSG00000021906 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:MGI Symbol;Acc:MGI:1916953]
Coordinates
chr14:32092068-32096544:+
Coord C1 exon
chr14:32092068-32092131
Coord A exon
chr14:32095365-32095471
Coord C2 exon
chr14:32096487-32096544
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCCAGACCTCTCTGCTTCAGGTC
3' ss Score
8.02
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CATAATTAAATCCAGAAGGAAAACGGACCACCTAGAGAGAACTGCCAGTGTCCTCCGCCGGGAG
Seq A exon
GTCATGGCTGCAGCTAAGGTGTGTGAAATCACTCACGAGTCTCCATCAGTGAAGAGCCTCCGTTTGCTTGTTGCTGATAAAGACTTTTCCTTTAAGGCTGGCCAGTG
Seq C2 exon
GGTTGATTTCTTCATCCCAGGAGTCTCAGTGGTTGGTGGGTTTTCAATTTGCTCCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021906-'5-15,'5-12,9-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
PF0097019=FAD_binding_6=PU(37.6=88.9)
C2:
PF0097019=FAD_binding_6=PD(53.5=80.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGGAAAACGGACCACC
R:
GGAGCAAATTGAAAACCCACCA
Band lengths:
108-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types