BtaEX0025607 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11754605-11758223:+
Coord C1 exon
chr22:11754605-11754657
Coord A exon
chr22:11756649-11756717
Coord C2 exon
chr22:11758159-11758223
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTCTTCTTTGTCTTTGCAGATA
3' ss Score
13.12
5' ss Seq
TAGGTAACT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GAATTCAAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAG
Seq A exon
ATACAGCAGAGGGTGTCTCTCAGGAACTCATTTCTGCCGGCCTCGTTGATGGAAGGGATTTAGTCATAG
Seq C2 exon
TGGCAGCTAATTTGCAGAAGATTGTGGAAGAACCCCAGTCAAATCGATCCGTCACCTTCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927-'22-24,'22-23,24-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.208 C2=0.045
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=FE(56.2=100)
A:
PF122023=OSR1_C=PD(18.8=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTCGATTTGAATTTACTCCTGGG
R:
CAGTTTGAAGGTGACGGATCGA
Band lengths:
95-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development