HsaEX6055098 @ hg38
Exon Skipping
Gene
ENSG00000172939 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr3:38249966-38252392:+
Coord C1 exon
chr3:38249966-38250018
Coord A exon
chr3:38251403-38251471
Coord C2 exon
chr3:38252328-38252392
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCTTTGTCCTTGCAGATA
3' ss Score
13.4
5' ss Seq
TAGGTAACT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAG
Seq A exon
ATACAGCAGAGGGTGTCTCTCAGGAACTCATTTCTGCTGGCCTGGTCGACGGAAGGGATTTAGTAATAG
Seq C2 exon
TGGCAGCTAATTTGCAGAAAATTGTGGAAGAACCTCAGTCAAATCGATCTGTCACTTTCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.208 C2=0.136
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=PD(73.3=75.9)
A:
PF122023=OSR1_C=PD(18.8=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTCGATTTGAATTTACTCCTGGG
R:
CAGTTTGAAAGTGACAGATCGAT
Band lengths:
95-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains