DreEX6094692 @ danRer10
Exon Skipping
Gene
ENSDARG00000027500 | oxsr1b
Description
oxidative stress responsive 1b [Source:ZFIN;Acc:ZDB-GENE-040426-723]
Coordinates
chr24:19922445-19927387:-
Coord C1 exon
chr24:19927335-19927387
Coord A exon
chr24:19924103-19924171
Coord C2 exon
chr24:19922445-19922509
Length
69 bp
Sequences
Splice sites
3' ss Seq
GATGTTTTCTCTCTGTGCAGATA
3' ss Score
10.98
5' ss Seq
TAGGTAATG
5' ss Score
7.57
Exon sequences
Seq C1 exon
AAACTTGAAAAAAGAGCTGAATGACATACGATTTGAGTTCATGCCTGGAAGAG
Seq A exon
ATACGGCAGATGGGGTTTCTCAGGAACTGGTATCAGCTGGCTTGGTTGATGGGAAAGATTTAGTTATAG
Seq C2 exon
TGGCTGCTAATCTGCAGAAGATAGTGGAAGAGCCTCATTCCAATAAAAATGTCACATTTAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027500-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.312 C2=0.182
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=FE(56.2=100)
A:
PF122023=OSR1_C=PD(18.8=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGAATGACATACGATTTGAGT
R:
TGTGACATTTTTATTGGAATGAGGCT
Band lengths:
97-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]