MmuEX0033371 @ mm10
Exon Skipping
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119241711-119244708:-
Coord C1 exon
chr9:119244656-119244708
Coord A exon
chr9:119242720-119242788
Coord C2 exon
chr9:119241711-119241775
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTCTTTGTTCTTCAGATA
3' ss Score
10.77
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAG
Seq A exon
ATACAGCAGAGGGTGTTTCTCAGGAGCTCATTTCTGCTGGCCTGGTTGATGGAAGGGATTTAGTAATAG
Seq C2 exon
TGGCAGCCAATCTGCAGAAGATTGTGGAAGAACCTCAGTCAAACCGATCTGTCACTTTCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.208 C2=0.136
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=FE(56.2=100)
A:
PF122023=OSR1_C=PD(18.8=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTCGATTTGAATTTACTCCTGGG
R:
CAGTTTGAAAGTGACAGATCGGT
Band lengths:
95-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types