RnoEX0062799 @ rn6
Exon Skipping
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127920349-127932745:-
Coord C1 exon
chr8:127932693-127932745
Coord A exon
chr8:127924476-127924544
Coord C2 exon
chr8:127920349-127923070
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCTCTGTCCTTACAGATA
3' ss Score
13.29
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
GAATTCCAAAAAAGAACTAAATGATATTCGATTTGAATTTACTCCTGGGAGAG
Seq A exon
ATACAGCAGAGGGTGTTTCTCAGGAGCTCATTTCTGCTGGCCTGGTCGACGGAAGGGATTTAGTGATAG
Seq C2 exon
GCATCTGGTGTTGAAGGCTCGGATATTCCTGATGATGGCAAACTGATAGGATTTGCCCAGCTCAGCATCAGCTAAACCACAGCCCCGGAAGAGTCAGCCTAGGAGACGCCACACATGCACATGTCTGTTGCTTCTGTTGGCCTGAACCTACAACTGCCAAAGAACCCAGCAAGGAACCTCCCAGCTCGGAGCTTTAGTTTTTCTCTTTGTTTTTCTTGCCTCCGCCCTTCTGCCCCCCTTTTCCTACAAGGAAAGAAAAGTTGGATCACCTGTGGCCAGCATCCCCTCAGAGAGTTCCGTTGGTAGACACGTTGCTCATGTGCCCTCTCCCTCCACGTGAGAGGCAGAAGTGGCCAGTGTGCCTCGAGGCCCAGGATGGAAGTCTCTCAGCTCATTCTTGCCTTACTAAGTTGTTGGCCCCAGTGGATCGAGCAGCCGCACTGGGCAGCCTCATCTTGCCTGCTCTCCCACACCTGCTGGGACATGAGCATCTTGGGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136_MULTIEX1-2/3=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=0.208 C2=0.000
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=PD(68.0=89.5)
A:
PF122023=OSR1_C=PD(18.8=25.0)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000018056fB10189
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATTTGAATTTACTCCTGGGAGA
R:
CAGGCCAACAGAAGCAACAGA
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]