DreEX6026855 @ danRer10
Exon Skipping
Gene
ENSDARG00000034189 | oxsr1a
Description
oxidative stress responsive 1a [Source:ZFIN;Acc:ZDB-GENE-070620-25]
Coordinates
chr2:24062202-24062659:+
Coord C1 exon
chr2:24062202-24062254
Coord A exon
chr2:24062385-24062453
Coord C2 exon
chr2:24062595-24062659
Length
69 bp
Sequences
Splice sites
3' ss Seq
GTTACTCTCTCTCCATCTAGACA
3' ss Score
8.99
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GAATACAAAGAAAGAGCTGAACGATATCAGATTTGAGTTCATGCCAGGGAGAG
Seq A exon
ACACAGCAGATGGAGTGTCTCAGGAGCTTGTGTCTGCTGGACTGGTGGATGGGAGAGATCTAGTCATTG
Seq C2 exon
TTGCAGCCAACTTACAGAAAATTGTTGATGATCCACAAACTCACAAAAATGTCACTTTCAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000034189-'22-18,'22-17,23-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.125 C2=0.045
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=FE(56.2=100)
A:
PF122023=OSR1_C=PD(18.8=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGAAAGAGCTGAACGATATCA
R:
AGCTTGAAAGTGACATTTTTGTGAGT
Band lengths:
113-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]