GgaEX6018257 @ galGal3
Exon Skipping
Gene
ENSGALG00000005979 | OXSR1
Description
NA
Coordinates
chr2:4840015-4842104:+
Coord C1 exon
chr2:4840015-4840067
Coord A exon
chr2:4841081-4841149
Coord C2 exon
chr2:4842040-4842104
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTTTCTCCCCAACAGATA
3' ss Score
11.35
5' ss Seq
TAGGTAATT
5' ss Score
7.27
Exon sequences
Seq C1 exon
GAATTCAAAAAAAGAACTCAATGATATCAGATTTGAATTTACGCCCGGGAGAG
Seq A exon
ATACTGCTGATGGCGTGTCTCAAGAACTAATTTCAGCAGGGCTTGTTGATGGCAGAGATCTGGTAATAG
Seq C2 exon
TTGCAGCTAATTTGCAGAAAATTGTGGAAGAGCCCCAAGCAAACAGATCCGTCACTTTCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=0.375 C2=0.091
Domain overlap (PFAM):
C1:
PF122023=OSR1_C=FE(56.2=100)
A:
PF122023=OSR1_C=PD(18.8=25.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCAGATTTGAATTTACGCCCGG
R:
CAGTTTGAAAGTGACGGATCTGT
Band lengths:
95-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]