BtaEX0025609 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11697613-11705980:+
Coord C1 exon
chr22:11697613-11697721
Coord A exon
chr22:11700279-11700415
Coord C2 exon
chr22:11705839-11705980
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCAATCCCATTAGTGA
3' ss Score
5.64
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
AAAGAAATCCAAGCCATGAGTCAGTGCCATCACCCTAATATTGTGTCTTACTACACATCTTTTGTGGTAAAAGATGAGCTGTGGCTCGTCATGAAGCTGTTAAGTGGAG
Seq A exon
TGACACACTGGAGAAACTGGATTGCTTTGTTAAAGGCCCTGTTCATATGATGGTTGGAAGCCTTGCTAACACCAACCACCTTTCAAGATGGTGGTCAAGCATGGTTCTTTCAGTATGGACAGATATGGGAATATTAG
Seq C2 exon
GTTCTGTTCTAGATATTATTAAGCACATTGTGGCAAAGGGGGAACATAAAAATGGGGTCCTGGATGAAGCTACCATCGCTACAATACTCAAAGAAGTGCTGGAGGGTTTGGAATACCTGCATAAAAATGGACAAATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(38.3=100),PF118843=DUF3404=FE(40.9=100)
A:
PF0006920=Pkinase=PD(12.8=70.6),PF118843=DUF3404=PD(14.8=76.5)
C2:
PF0006920=Pkinase=FE(17.1=100)
Main Inclusion Isoform:
ENSBTAT00000019872fB4949
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAGCCATGAGTCAGTGC
R:
TGTGAATTTGTCCATTTTTATGCAGG
Band lengths:
244-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development