MmuEX0033374 @ mm10
Exon Skipping
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119284546-119294523:-
Coord C1 exon
chr9:119294415-119294523
Coord A exon
chr9:119290737-119290865
Coord C2 exon
chr9:119284546-119284687
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTAATCCCATTAGTGA
3' ss Score
5.24
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
AAAGAAATCCAGGCCATGAGCCAATGCCATCATCCTAACATTGTGTCTTACTACACATCTTTTGTGGTAAAGGATGAGCTGTGGCTCGTCATGAAGCTGCTAAGTGGAG
Seq A exon
TGACACACTGGAGAAACTGGATTGCTTTGTTAAAGGCCCGTTTCATATGATGGTTGCTAACACCAACCACCTTTCAAGATGGTGGTCAAGCATGGTTCTTTTCAGTATGGACAGATATGGGATCATTAG
Seq C2 exon
GTTCTGTTCTGGATATTATTAAACACATTGTGGCAAAGGGGGAACATAAGAGTGGAGTTCTGGACGAGCCAACCATTGCTACAATCCTCCGAGAAGTCTTAGAAGGACTGGAGTACCTGCATAAGAATGGGCAGATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.1=100)
A:
PF0006920=Pkinase=PD(12.8=70.6)
C2:
PF0006920=Pkinase=FE(17.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAAATCCAGGCCATGAGC
R:
TCTGCCCATTCTTATGCAGGT
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types