Special

MmuEX0033374 @ mm9

Exon Skipping

Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119193664-119203641:-
Coord C1 exon
chr9:119203533-119203641
Coord A exon
chr9:119199855-119199983
Coord C2 exon
chr9:119193664-119193805
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTTAATCCCATTAGTGA
3' ss Score
5.24
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
AAAGAAATCCAGGCCATGAGCCAATGCCATCATCCTAACATTGTGTCTTACTACACATCTTTTGTGGTAAAGGATGAGCTGTGGCTCGTCATGAAGCTGCTAAGTGGAG
Seq A exon
TGACACACTGGAGAAACTGGATTGCTTTGTTAAAGGCCCGTTTCATATGATGGTTGCTAACACCAACCACCTTTCAAGATGGTGGTCAAGCATGGTTCTTTTCAGTATGGACAGATATGGGATCATTAG
Seq C2 exon
GTTCTGTTCTGGATATTATTAAACACATTGTGGCAAAGGGGGAACATAAGAGTGGAGTTCTGGACGAGCCAACCATTGCTACAATCCTCCGAGAAGTCTTAGAAGGACTGGAGTACCTGCATAAGAATGGGCAGATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0006920=Pkinase=FE(38.3=100),PF118843=DUF3404=FE(40.9=100)

							
A:
PF0006920=Pkinase=PD(12.8=70.6),PF118843=DUF3404=PD(14.8=76.5)

							
C2:
PF0006920=Pkinase=FE(17.1=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000122692





     
                   









    
Main Skipping Isoform:
ENSMUSP00000042155





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000042155f3557A
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr3:38193282-38193418 
ALTERNATIVE
HsaEX0045067
(OXSR1)
Human
(hg19)
chr3:38234773-38234909 
ALTERNATIVE
HsaEX0045067
(OXSR1)
Rat
(rn6)
chr8:127978246-127978372 
LOW PSI
RnoEX0062796
(Oxsr1)
Cow
(bosTau6)
chr22:11700279-11700415 
LOW PSI
BtaEX0025609
(OXSR1)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AAAGAAATCCAGGCCATGAGC

				
R: 
TCTGCCCATTCTTATGCAGGT

				
Band lengths: 
244-373

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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