HsaEX0045067 @ hg38
Exon Skipping
Gene
ENSG00000172939 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr3:38190731-38198863:+
Coord C1 exon
chr3:38190731-38190839
Coord A exon
chr3:38193282-38193418
Coord C2 exon
chr3:38198722-38198863
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCAATCCCATTAGTGA
3' ss Score
5.64
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
AAAGAAATTCAAGCCATGAGTCAATGCCATCATCCTAATATTGTATCTTACTACACATCTTTTGTGGTAAAAGATGAGCTGTGGCTTGTCATGAAGCTGCTAAGTGGAG
Seq A exon
TGACACACTGGAGAAACTGGATTGCTTTGTTAAAGGCCCTGTTCATATGATGGTTGGAAGCTTTGCTAACACCAACCACCTTTCAAGATGGTGGTCAAGCATGGTTCTTTCAGTATGGAGAGATATGGGAGTATTAG
Seq C2 exon
GTTCTGTTCTGGATATTATTAAGCACATTGTGGCAAAAGGGGAACACAAAAGTGGAGTCCTAGATGAATCTACCATTGCTACGATACTCCGAGAAGTACTGGAAGGGCTGGAATATCTGCATAAAAATGGACAGATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.1=100)
A:
PF0006920=Pkinase=PD(12.8=70.6)
C2:
PF0006920=Pkinase=FE(17.1=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCAAGCCATGAGTCAATGCC
R:
GGATCTGTCCATTTTTATGCAGAT
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development