RnoEX0062796 @ rn6
Exon Skipping
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127971477-127981039:-
Coord C1 exon
chr8:127980931-127981039
Coord A exon
chr8:127978246-127978372
Coord C2 exon
chr8:127971477-127971618
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCACTTCCATTAGTGA
3' ss Score
5.41
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
AAAGAAATCCAAGCTATGAGTCAATGCCATCATCCTAACATTGTGTCTTACTACACATCCTTTGTGGTAAAAGATGAGCTGTGGCTGGTCATGAAGCTGCTAAGTGGAG
Seq A exon
TGACACTGGAGAGACTGGATTGCTTTGTTAAAGGCCCATTTCATATGATGGTGGCTAACACCAACCGCCTGTCAAGATGGTGGTCAAGCGTGGTTCTTTTCAGTATGGACAGATGTGGGAACCTTAG
Seq C2 exon
GTTCCGTTCTGGATATTATTAAACACATTGTGGCAAAGGGGGAACATAAGGGCGGAGTTTTGGATGAGTCGACCATCGCTACAATCCTCCGAGAAGTCTTAGAAGGACTGGAGTACCTGCACAAGAACGGGCAGATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136-'7-11,'7-10,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.1=100)
A:
PF0006920=Pkinase=PD(27.4=72.1)
C2:
PF0006920=Pkinase=FE(17.1=100)
Main Inclusion Isoform:
ENSRNOT00000018056fB10191
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGCTATGAGTCAATGCCA
R:
CTGTGGATCTGCCCGTTCTTG
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]