HsaEX0045067 @ hg19
Exon Skipping
Gene
ENSG00000172939 | OXSR1
Description
oxidative-stress responsive 1 [Source:HGNC Symbol;Acc:8508]
Coordinates
chr3:38232222-38240354:+
Coord C1 exon
chr3:38232222-38232330
Coord A exon
chr3:38234773-38234909
Coord C2 exon
chr3:38240213-38240354
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCAATCCCATTAGTGA
3' ss Score
5.64
5' ss Seq
TAGGTAATA
5' ss Score
6.84
Exon sequences
Seq C1 exon
AAAGAAATTCAAGCCATGAGTCAATGCCATCATCCTAATATTGTATCTTACTACACATCTTTTGTGGTAAAAGATGAGCTGTGGCTTGTCATGAAGCTGCTAAGTGGAG
Seq A exon
TGACACACTGGAGAAACTGGATTGCTTTGTTAAAGGCCCTGTTCATATGATGGTTGGAAGCTTTGCTAACACCAACCACCTTTCAAGATGGTGGTCAAGCATGGTTCTTTCAGTATGGAGAGATATGGGAGTATTAG
Seq C2 exon
GTTCTGTTCTGGATATTATTAAGCACATTGTGGCAAAAGGGGAACACAAAAGTGGAGTCCTAGATGAATCTACCATTGCTACGATACTCCGAGAAGTACTGGAAGGGCTGGAATATCTGCATAAAAATGGACAGATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(24.5=100),PF118843=DUF3404=PD(46.6=91.9)
A:
PF0006920=Pkinase=PD(12.8=70.6),PF118843=DUF3404=PD(14.8=76.5)
C2:
PF0006920=Pkinase=FE(17.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCAAGCCATGAGTCAATGCC
R:
GGATCTGTCCATTTTTATGCAGAT
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)