MmuEX0033373 @ mm10
Exon Skipping
Gene
ENSMUSG00000036737 | Oxsr1
Description
oxidative-stress responsive 1 [Source:MGI Symbol;Acc:MGI:1917378]
Coordinates
chr9:119284546-119304917:-
Coord C1 exon
chr9:119304805-119304917
Coord A exon
chr9:119294415-119294523
Coord C2 exon
chr9:119284546-119284687
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTTTTTTCTTTGTAGAAA
3' ss Score
10.29
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGAGTGGAGCAACTGCCGTGGTCCAAGCAGCTTACTGTGCCCCCAAAAAGGAGAGAGTGGCGATCAAGCGGATAAACCTGGAGAAGTGTCAGACCAGCATGGATGAGCTCCTG
Seq A exon
AAAGAAATCCAGGCCATGAGCCAATGCCATCATCCTAACATTGTGTCTTACTACACATCTTTTGTGGTAAAGGATGAGCTGTGGCTCGTCATGAAGCTGCTAAGTGGAG
Seq C2 exon
GTTCTGTTCTGGATATTATTAAACACATTGTGGCAAAGGGGGAACATAAGAGTGGAGTTCTGGACGAGCCAACCATTGCTACAATCCTCCGAGAAGTCTTAGAAGGACTGGAGTACCTGCATAAGAATGGGCAGATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036737_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.5=100)
A:
PF0006920=Pkinase=FE(13.1=100)
C2:
PF0006920=Pkinase=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGAGCAACTGCCGTG
R:
TCTGCCCATTCTTATGCAGGT
Band lengths:
247-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types