DreEX0052992 @ danRer10
Exon Skipping
Gene
ENSDARG00000027500 | oxsr1b
Description
oxidative stress responsive 1b [Source:ZFIN;Acc:ZDB-GENE-040426-723]
Coordinates
chr24:19950934-19982656:-
Coord C1 exon
chr24:19982544-19982656
Coord A exon
chr24:19965658-19965766
Coord C2 exon
chr24:19950934-19951075
Length
109 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTCTCTCTGTAGAAA
3' ss Score
13.36
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GCAGTGGAGCTACAGCTGTGGTTCAGGCTGCTTACTGTGTGCCCAGGAAGGAGAAAGTGGCCATCAAACGCATCAATCTGGAGAAATGCCAGACCAGCATGGATGAGCTCCTG
Seq A exon
AAAGAGATTCAGGCGATGAGCCAGTGTCACCATCCCAACATTGTGTCGTACTACACCTCGTTTGTGGTGAAGGATGAGCTGTGGTTGGTCATGAAGCTGCTCAGTGGTG
Seq C2 exon
GCTCGGTGTTGGACGTCATCAAGCACATCATTTCAAAGGGTGAACACAAGACCGGTGTGCTGGACGAGCCTAGTATAGCTACAGTGCTGAAAGAAGTGCTTCAGGGTCTCGAGTACCTTCACAAAAATGGACAGATTCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027500_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.5=100)
A:
PF0006920=Pkinase=FE(13.1=100)
C2:
PF0006920=Pkinase=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGCTGTGGTTCAGGCTG
R:
TGAATCTGTCCATTTTTGTGAAGGT
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]