HsaEX0045066 @ hg38
Exon Skipping
Gene
ENSG00000172939 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr3:38183003-38198863:+
Coord C1 exon
chr3:38183003-38183115
Coord A exon
chr3:38190731-38190839
Coord C2 exon
chr3:38198722-38198863
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTCTCTTCTTTGTAGAAA
3' ss Score
10.27
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGAGTGGAGCAACTGCTGTAGTCCAAGCAGCTTATTGTGCCCCTAAAAAGGAGAAAGTGGCAATCAAACGGATAAACCTTGAGAAATGTCAAACTAGCATGGATGAACTCCTG
Seq A exon
AAAGAAATTCAAGCCATGAGTCAATGCCATCATCCTAATATTGTATCTTACTACACATCTTTTGTGGTAAAAGATGAGCTGTGGCTTGTCATGAAGCTGCTAAGTGGAG
Seq C2 exon
GTTCTGTTCTGGATATTATTAAGCACATTGTGGCAAAAGGGGAACACAAAAGTGGAGTCCTAGATGAATCTACCATTGCTACGATACTCCGAGAAGTACTGGAAGGGCTGGAATATCTGCATAAAAATGGACAGATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939_MULTIEX2-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.5=100)
A:
PF0006920=Pkinase=FE(13.1=100)
C2:
PF0006920=Pkinase=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGCTGTAGTCCAAGCA
R:
GGATCTGTCCATTTTTATGCAGAT
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development