RnoEX0062794 @ rn6
Exon Skipping
Gene
ENSRNOG00000013136 | Oxsr1
Description
oxidative-stress responsive 1 [Source:RGD Symbol;Acc:1310466]
Coordinates
chr8:127971477-127991861:-
Coord C1 exon
chr8:127991749-127991861
Coord A exon
chr8:127980931-127981039
Coord C2 exon
chr8:127971477-127971618
Length
109 bp
Sequences
Splice sites
3' ss Seq
GTGTATTTTTTTCTTTGTAGAAA
3' ss Score
9.82
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGAGTGGAGCAACTGCTGTGGTCCAAGCAGCTTACTGTGCCCCCAAAAAGGAGAGAGTGGCAATCAAACGGATAAACCTGGAGAAGTGTCAGACGAGCATGGATGAGCTCCTG
Seq A exon
AAAGAAATCCAAGCTATGAGTCAATGCCATCATCCTAACATTGTGTCTTACTACACATCCTTTGTGGTAAAAGATGAGCTGTGGCTGGTCATGAAGCTGCTAAGTGGAG
Seq C2 exon
GTTCCGTTCTGGATATTATTAAACACATTGTGGCAAAGGGGGAACATAAGGGCGGAGTTTTGGATGAGTCGACCATCGCTACAATCCTCCGAGAAGTCTTAGAAGGACTGGAGTACCTGCACAAGAACGGGCAGATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013136-'5-11,'5-8,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.5=100)
A:
PF0006920=Pkinase=FE(13.1=100)
C2:
PF0006920=Pkinase=FE(17.1=100)
Main Skipping Isoform:
ENSRNOT00000018056fB10190
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGCTGTGGTCCAAGCAG
R:
CTGTGGATCTGCCCGTTCTTG
Band lengths:
246-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]