GgaEX1041642 @ galGal4
Exon Skipping
Gene
ENSGALG00000005979 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr2:4844422-4868558:+
Coord C1 exon
chr2:4844422-4844534
Coord A exon
chr2:4855323-4855431
Coord C2 exon
chr2:4868417-4868558
Length
109 bp
Sequences
Splice sites
3' ss Seq
TATTTTATTTTTCTTTGCAGAAA
3' ss Score
10.94
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGAGCGGAGCGACAGCTGTGGTGCAGGCAGCCTTCTGTGTTCCAAAGAAGGAGAAGGTGGCAATTAAACGGATCAATCTTGAGAAGTGTCAGACGAGCATGGATGAACTCCTG
Seq A exon
AAAGAAATTCAAGCAATGAGTCAGTGCCACCATCCCAACATTGTATCTTACTACACATCGTTTGTGGTGAAAGATGAGCTTTGGCTGGTGATGAAGTTACTTAGTGGAG
Seq C2 exon
GTTCTGTTTTGGATATTATAAAGCACATTGTGGCCAAAGGAGAACACAAGACCGGTGTCCTGGATGAGCCCTGTATAGCCACGATCCTCAAGGAGGTGCTGGAGGGGCTGGACTACCTGCATAAAAACGGACAAATCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005979-'10-12,'10-9,17-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(13.5=100)
A:
PF0006920=Pkinase=FE(13.1=100)
C2:
PF0006920=Pkinase=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAGCTGTGGTGCAGG
R:
GGATTTGTCCGTTTTTATGCAGGT
Band lengths:
242-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]