BtaEX6093377 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014927 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr22:11690909-11705980:+
Coord C1 exon
chr22:11690909-11691021
Coord A exon
chr22:11697613-11697721
Coord C2 exon
chr22:11705839-11705980
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTCTCTTCTTTGTAGAAA
3' ss Score
10.27
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGAGTGGAGCAACGGCTGTGGTCCAAGCAGCGTATTGTGCCCCTAAAAAGGAGAAAGTGGCAATCAAACGGATAAACCTTGAGAAATGTCAGACTAGCATGGATGAACTCCTG
Seq A exon
AAAGAAATCCAAGCCATGAGTCAGTGCCATCACCCTAATATTGTGTCTTACTACACATCTTTTGTGGTAAAAGATGAGCTGTGGCTCGTCATGAAGCTGTTAAGTGGAG
Seq C2 exon
GTTCTGTTCTAGATATTATTAAGCACATTGTGGCAAAGGGGGAACATAAAAATGGGGTCCTGGATGAAGCTACCATCGCTACAATACTCAAAGAAGTGCTGGAGGGTTTGGAATACCTGCATAAAAATGGACAAATTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014927-'5-7,'5-4,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(39.4=100),PF118843=DUF3404=PU(42.0=97.4)
A:
PF0006920=Pkinase=FE(38.3=100),PF118843=DUF3404=FE(40.9=100)
C2:
PF0006920=Pkinase=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGGCTGTGGTCCAAGC
R:
TGTGAATTTGTCCATTTTTATGCAGG
Band lengths:
245-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]