BtaEX0026442 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017832 | PDK3
Description
Bos taurus pyruvate dehydrogenase kinase, isozyme 3 (PDK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101934]
Coordinates
chrX:125892049-125898905:-
Coord C1 exon
chrX:125898834-125898905
Coord A exon
chrX:125894647-125894831
Coord C2 exon
chrX:125892049-125892138
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCCTTCCCATGCAGCTT
3' ss Score
9.94
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTATATGCAGAGTTTTCTTGAACTTCTAGAATATGAAAATAAGAGCCCTGAAGATCCGCAGGTCTTGGATAA
Seq A exon
CTTTCTCCAAGTCCTAATTAAAGTCAGAAATAGACACAATGATGTGGTTCCTACAATGGCCCAAGGAGTGATCGAGTACAAGGAGAAGTTTGGGTTTGATCCATTCATTAGCAGTAACATCCAGTATTTTCTGGACCGATTTTATACCAACCGCATCTCTTTCCGCATGCTTATTAACCAGCACA
Seq C2 exon
CACTTCTGTTTGGCGGTGACACCAATCCTGTGCATCCGAAACACATCGGAAGTATTGATCCCACCTGCAACGTTGCTGATGTTGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017832_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.5=100)
A:
PF104364=BCDHK_Adom3=FE(37.6=100)
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Skipping Isoform:
ENSBTAT00000023706fB5116
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGTTTTCTTGAACTTCTAGA
R:
TTCACAACATCAGCAACGTTG
Band lengths:
155-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development