DreEX0054446 @ danRer10
Exon Skipping
Gene
ENSDARG00000014527 | pdk3a
Description
pyruvate dehydrogenase kinase, isozyme 3a [Source:ZFIN;Acc:ZDB-GENE-061220-3]
Coordinates
chr24:24805044-24809171:-
Coord C1 exon
chr24:24809100-24809171
Coord A exon
chr24:24805217-24805401
Coord C2 exon
chr24:24805044-24805133
Length
185 bp
Sequences
Splice sites
3' ss Seq
ACCTGTCAACATTTTTCTAGCTT
3' ss Score
6.26
5' ss Seq
ACAGTACGT
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTACTTGCAAAGCTTTTTAGAGCTTCTAGAGTTTGAGAACAGGAAGCCAGAAGATGGACATGCCCTGAATGA
Seq A exon
CTTCTTAGAGACTCTTATTGAGATCAGGAACAGACACAATGATGTGGTCCCAACTATGGCCCAGGGTGTGATAGAATATAAGGAGAAGTTTGGATTCGATCCATTCGTCAGCTCCAACATCCAGTACTTTCTGGACCGCTTCTACACCAACCGAATTTCCTTTCGCATGCTCATCAACCAGCACA
Seq C2 exon
CTCTCCTCTTTGGCAATGACATCAACCCAGCGCATCCCAAACACATCGGCAGTATTGATCCCAGCTGCAATGTTGCTGAAGTGGTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014527-'4-7,'4-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(16.8=100)
A:
PF104364=BCDHK_Adom3=FE(43.4=100)
C2:
PF104364=BCDHK_Adom3=PD(14.0=64.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGAGCTTCTAGAGTTTGAGAACA
R:
CAGTCACCACTTCAGCAACAT
Band lengths:
146-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]