RnoEX0064572 @ rn6
Exon Skipping
Gene
ENSRNOG00000012513 | Pdk3
Description
pyruvate dehydrogenase kinase 3 [Source:RGD Symbol;Acc:1593276]
Coordinates
chrX:62870862-62877765:-
Coord C1 exon
chrX:62877694-62877765
Coord A exon
chrX:62872637-62872821
Coord C2 exon
chrX:62870862-62870951
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTCCTTCCCACCAGCTT
3' ss Score
8.55
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTACATGCAGAGCTTCCTTGAACTTTTAGAATATGAAAACAAGAGCCCAGAAGATCCACGCGTTTTAGATAA
Seq A exon
CTTTCTCCACGTTTTGATAAATATCAGAAACAGACACAATGACGTTGTTCCTACAATGGCCCAAGGCGTGATTGAGTACAAGGAAAAGTTCGGGTTTGATCCATTCATTAGCAGTAACATTCAATATTTCCTGGATCGGTTTTATACCAACCGCATTTCTTTCCGCATGCTTATTAACCAGCACA
Seq C2 exon
CCCTTCTGTTTGGTGGTGACACTAACCCCGCTCATCCGAAACATATAGGGAGTATCGATCCCACCTGTAATGTAGCTGATGTGGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012513-'3-8,'3-6,4-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.5=100)
A:
PF104364=BCDHK_Adom3=FE(37.6=100)
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATGCAGAGCTTCCTTGA
R:
CTTTCACCACATCAGCTACATTACA
Band lengths:
162-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]