BtaEX0026529 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012405 | PEAR1
Description
Bos taurus platelet endothelial aggregation receptor 1 (PEAR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001101300]
Coordinates
chr3:13988964-13989743:-
Coord C1 exon
chr3:13989531-13989743
Coord A exon
chr3:13989209-13989297
Coord C2 exon
chr3:13988964-13989099
Length
89 bp
Sequences
Splice sites
3' ss Seq
ACCTGTGTCTGTTTGTGCAGATG
3' ss Score
9.84
5' ss Seq
AAGGTCGGT
5' ss Score
7.13
Exon sequences
Seq C1 exon
GAAGCCAGGAGCCGATCACCATGATGCCCACCCCTCCGGTGGCCTATAACTCGCTTGGGGCAGTGATTGGCATCGCAGTGCTGGGGTCCCTGGTGGTGGCCCTGGTGGCGCTGTTCATTGGCTACCGTCACTGGCAAAAGGGCAAGGAGCATCAGCACCTGGCAGTGGGCTACAGCAGCGGACGACTGGACGGCTCTGAGTATGTCATGCCAG
Seq A exon
ATGTCCCTCCGAGCTACAGTCACTACTACTCCAACCCCAGCTACCACACCCTATCACAGTGCTCACCGAACCCCCCACCCGCTAAGAAG
Seq C2 exon
GTTCCAGGCAGTCAGCTCTTTGCCAGCCTCCAGGCCTCTGAGCGACCAGGTGGAGCCCATGGACTTGATAACCATGCCACGCTACCTGCAGACTGGAAGCACCGCCGGGAGCCCCCGGCAGGGCCTCTGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012405_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.400 C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGTCACTGGCAAAAGGG
R:
CAGGTAGCGTGGCATGGTTAT
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development