MmuEX0034403 @ mm9
Exon Skipping
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87555572-87556241:-
Coord C1 exon
chr3:87556029-87556241
Coord A exon
chr3:87555776-87555864
Coord C2 exon
chr3:87555572-87555695
Length
89 bp
Sequences
Splice sites
3' ss Seq
CACCCGTGTTTGTCCTGCAGATG
3' ss Score
11.93
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAAGCCAGGAGTCCTTCACCATAATGCCCACCTCTCCCGTGACCCATAACTCACTGGGTGCAGTGATTGGCATTGCAGTACTGGGAACCCTCGTGGTGGCCCTGATAGCACTGTTCATTGGCTACCGCCAGTGGCAAAAGGGCAAGGAACATGAGCACTTGGCAGTGGCTTACAGCACTGGGCGGCTGGATGGCTCTGATTACGTCATGCCAG
Seq A exon
ATGTCTCTCCGAGCTATAGTCACTACTACTCCAACCCCAGCTACCACACACTGTCTCAGTGTTCTCCTAACCCCCCACCCCCTAACAAG
Seq C2 exon
GTCCCAGGCAGTCAGCTCTTTGTCAGCTCCCAGGCCCCTGAGCGGCCAAGCAGAGCCCACGGGCGTGAGAACCATGTCACACTGCCCGCTGACTGGAAGCACCGCCGGGAGCCCCATGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.467 C2=1.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(26.1=16.9)
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATTGCAGTACTGGGAAC
R:
AGCTGACAAAGAGCTGACTGC
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: