HsaEX0046538 @ hg19
Exon Skipping
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:33631]
Coordinates
chr1:156882562-156883315:+
Coord C1 exon
chr1:156882562-156882774
Coord A exon
chr1:156882986-156883074
Coord C2 exon
chr1:156883183-156883315
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGCTTGTGTCTGTCATGCAGATG
3' ss Score
9.11
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAATCCAGGAGCCCTTTACTGTGATGCCGACCACTCCAGTAGCGTATAACTCGCTGGGTGCAGTGATTGGCATTGCAGTGCTGGGGTCCCTTGTGGTAGCCCTGGTGGCACTGTTCATTGGCTATCGGCACTGGCAAAAAGGCAAGGAGCACCACCACCTGGCTGTGGCTTACAGCAGCGGGCGCCTGGACGGCTCCGAGTATGTCATGCCAG
Seq A exon
ATGTCCCTCCGAGCTACAGTCACTACTACTCCAACCCCAGCTACCACACCCTGTCGCAGTGCTCCCCAAACCCCCCACCCCCTAACAAG
Seq C2 exon
GTTCCAGGCCCGCTCTTTGCCAGCCTGCAGAACCCTGAGCGGCCAGGTGGGGCCCAAGGGCATGATAACCACACCACCCTGCCTGCTGACTGGAAGCACCGCCGGGAGCCCCCTCCAGGGCCTCTGGACAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.467 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTGGCTATCGGCACTGG
R:
GGTGGTGTGGTTATCATGCCC
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)