Special

HsaEX0046538 @ hg19

Exon Skipping

Gene
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:33631]
Coordinates
chr1:156882562-156883315:+
Coord C1 exon
chr1:156882562-156882774
Coord A exon
chr1:156882986-156883074
Coord C2 exon
chr1:156883183-156883315
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGCTTGTGTCTGTCATGCAGATG
3' ss Score
9.11
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAATCCAGGAGCCCTTTACTGTGATGCCGACCACTCCAGTAGCGTATAACTCGCTGGGTGCAGTGATTGGCATTGCAGTGCTGGGGTCCCTTGTGGTAGCCCTGGTGGCACTGTTCATTGGCTATCGGCACTGGCAAAAAGGCAAGGAGCACCACCACCTGGCTGTGGCTTACAGCAGCGGGCGCCTGGACGGCTCCGAGTATGTCATGCCAG
Seq A exon
ATGTCCCTCCGAGCTACAGTCACTACTACTCCAACCCCAGCTACCACACCCTGTCGCAGTGCTCCCCAAACCCCCCACCCCCTAACAAG
Seq C2 exon
GTTCCAGGCCCGCTCTTTGCCAGCCTGCAGAACCCTGAGCGGCCAGGTGGGGCCCAAGGGCATGATAACCACACCACCCTGCCTGCTGACTGGAAGCACCGCCGGGAGCCCCCTCCAGGGCCTCTGGACAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.042 A=0.467 C2=1.000
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTGGCTATCGGCACTGG
R:
GGTGGTGTGGTTATCATGCCC
Band lengths:
178-267
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development