GgaEX1042990 @ galGal4
Exon Skipping
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:405329-406073:-
Coord C1 exon
chr25:405858-406073
Coord A exon
chr25:405686-405792
Coord C2 exon
chr25:405329-405440
Length
107 bp
Sequences
Splice sites
3' ss Seq
GGCTGACGTCTGTCCCCCAGATG
3' ss Score
8.15
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
GGAACCCCGACCAGCCCTACACCATCGTGCCAGCCCCCCCGTTGGCCTACAGCACGCTGGGGATGGTGGTCAGCCTGGTGGCCCTGGTGGCTCTGCTGGTGGCCGTGGTGGCTGTGGCACTGTGCTACCGCCACCGGCAGAAGGGAAAGGAGAACAGACACCTGGCCGTGGCGTACACAGCAGGACGGACGGACACCTCTGAGTACGTGGTGCCAG
Seq A exon
ATGTGCCACCGAACCACACGCACTACTACTCCAACCCCAGCTACCACACGCTGTCCCAGTGCACATTGCCTGCCCACAGCAGCCAGGACAGAGCCAGCTCCCTAAAG
Seq C2 exon
GTCCCCACCTCCCAGCCCTTCCATGGCGCAGAGAGGCCTTATGGCCCTGAAGGCAATGCCACCCTTCCCCCTGACTGGAAGCATCTGGGGGCACCACCACAGGAAGCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622-'20-28,'20-25,21-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.528 C2=1.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(11.8=5.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGCCCTACACCATCGT
R:
ATAAGGCCTCTCTGCGCCAT
Band lengths:
250-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]