DreEX0054593 @ danRer10
Exon Skipping
Gene
ENSDARG00000060753 | pear1
Description
platelet endothelial aggregation receptor 1 [Source:ZFIN;Acc:ZDB-GENE-091230-1]
Coordinates
chr16:30552781-30557358:+
Coord C1 exon
chr16:30552781-30552990
Coord A exon
chr16:30553167-30553276
Coord C2 exon
chr16:30557232-30557358
Length
110 bp
Sequences
Splice sites
3' ss Seq
CATTTGCATATTACATCTAGATG
3' ss Score
3.87
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
AGCAGGAGTTGAGTGTGATGGTGCCCGTGTCTCCGGTGGAGAGGGACTCGTGGGGTGCGATCGCAGGCATTGTGGTGCTGGTGATTCTGGTTGTGCTGCTGCTGGCCGTTCTGCTGTTGTATCGGCGCAGACAGCAGGACAAACAGAGCAACACACCCGTCGTCTCTTTCTCTTCTACACGCACCGTCAGTTCCGAGTATGCCGTGCCTG
Seq A exon
ATGTTCCGCATAGCTACCATCACTATTACTCAAACCCGAGTTACCACACACTGTCTCAGAACAGACCTCCACTGCCACACCTGCCCAACAACCAGGATCGAGCCATCAAG
Seq C2 exon
AACACCAATAACCAGCTGTTCTGCAGTCTGAAGAACATGGAGCGGGAGAGGAGAGGTCTGTTTACAGCTGATACTAATGCAACACTTCCTCCAGGCTGGAAACACCAGGAGCCGCCGAAAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060753-'18-21,'18-20,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.113 A=0.541 C2=0.581
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGAGTGTGATGGTGCCC
R:
CCCGCTCCATGTTCTTCAGAC
Band lengths:
251-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]