Special

RnoEX0064787 @ rn6

Exon Skipping

Gene
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187116638-187117311:-
Coord C1 exon
chr2:187117099-187117311
Coord A exon
chr2:187116845-187116933
Coord C2 exon
chr2:187116638-187116761
Length
89 bp
Sequences
Splice sites
3' ss Seq
CACCTGTGTTTGTCCTGCAGATG
3' ss Score
12.01
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCAGCCAGGAGTCCTTCACCATAATGCCCACCTCTCCTGTGATCCATAACTCACTGGGTGCCGTGATTGGCATTGCAGTGCTGGGGACCCTTGTGGTGGCCCTGGTAGCACTGTTTATTGGCTACCGACACTGGCAAAAGGGCAAGGAACATGAGCACTTGGCAGTGGCTTACAGCACTGGGCGACTGGATGGCTCCGATTACGTCATGCCAG
Seq A exon
ATGTCTCTCCGAGCTACAGTCACTACTATTCCAACCCTAGCTACCACACACTGTCTCAGTGTTCTCCTAACCTTCCACCCCCTAACAAG
Seq C2 exon
ATTCCAGGCAGTCAGCTGTTTGTCAGCTCCCAGGCATCTGAGCGGCCAAACAGAAACCATGGGCGAGATAACCACGCCACACTGCCCGCTGACTGGAAGCACCGACGGGAGTCCCATGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243-'29-33,'29-32,30-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.028 A=0.300 C2=1.000
Domain overlap (PFAM):

C1:
PF0005319=Laminin_EGF=PD(25.0=13.9)
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGACACTGGCAAAAGGG
R:
CAGTGTGGCGTGGTTATCTCG
Band lengths:
176-265
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]