BtaEX0026791 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016958 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr8:112152041-112154765:-
Coord C1 exon
chr8:112154617-112154765
Coord A exon
chr8:112152889-112152984
Coord C2 exon
chr8:112152041-112152109
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGGCTCCTCTGGCTCTCCAGATG
3' ss Score
8.61
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
Exon sequences
Seq C1 exon
AAAGGCGGCGCGCTGAAGAAGGGCGCCATCGCCAGGACGCTGCAGGCCGTGAAGATGGTGCTGTCCTACCAGCCCGAGGAGCTCGAGTGGGACTCCCCCCACCGCACCAACCAGCAGCAGTGCTACTGCTACTGCGGCGGTCCTGGAGA
Seq A exon
ATGGTACCTGCGGATGCTGCAGTGTTACCGCTGCAGGCAGTGGTTCCACGAGGCCTGCACCCAGTGTCTCAATGAGCCCATGATGTTCGGTGACCG
Seq C2 exon
GTTCTACCTGTTCTTCTGCTCCGTGTGCAACCAGGGCCCAGAGTACATTGAGAGGCTGCCCCTGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016958_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(15.1=16.0)
A:
PF0062824=PHD=FE(60.4=100)
C2:
PF0062824=PHD=PD(22.6=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGAAGATGGTGCTGTCC
R:
CAGGGGCAGCCTCTCAATGTA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development