GgaEX0001846 @ galGal3
Exon Skipping
Gene
ENSGALG00000001595 | PHF19
Description
NA
Coordinates
chr17:8991561-8992189:-
Coord C1 exon
chr17:8992089-8992189
Coord A exon
chr17:8991774-8991869
Coord C2 exon
chr17:8991561-8991661
Length
96 bp
Sequences
Splice sites
3' ss Seq
CGGCTCCTCTCCCTCCCCAGGTG
3' ss Score
12.54
5' ss Seq
TCGGTACGT
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTCAAGATGGTGCTGTCCTACAACCCCGACCTGCTGGAGTGGGACTCTCCGCACCGCACCAACCAACAGCAGTGCTACTGCTACTGCGGGGGCCCTGGCGA
Seq A exon
GTGGTACCTGAAGATGCTGCAGTGCTACCGCTGCCGGCAGTGGTTCCATGAGGCGTGCACTCAGTGCCTCAGTGACCCCATGATGTTCGGGGATCG
Seq C2 exon
GTTCTATGTGTTTTTCTGCTCTGTGTGCAACCAGGGACCTGAGTACATCAAGCGCCTGCCCCTGCGATGGTGAGAAACAGACGTGGCCCTGTTGTGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595-'6-5,'6-4,7-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGTGCTGTCCTACAACCC
R:
ACGTCTGTTTCTCACCATCGC
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]