DreEX0055031 @ danRer10
Exon Skipping
Gene
ENSDARG00000078050 | phf19
Description
PHD finger protein 19 [Source:ZFIN;Acc:ZDB-GENE-081105-128]
Coordinates
chr8:12342840-12350303:-
Coord C1 exon
chr8:12350155-12350303
Coord A exon
chr8:12347340-12347435
Coord C2 exon
chr8:12342840-12342908
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGATTTGCCCATCAGGTG
3' ss Score
8.06
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
AAAGGGGGAGCTTTGAAGAAAGGGCAGCTGGCCAAAGATCTGCAGGCCATGAAGCAGGTGCTGACCTATAATCCAGAGGAGCTCGAGTGGGACTCTTTGCACCGCACAAACCATCAGCAGTGCTATTGCTATTGCGGAGGACCTGGGCA
Seq A exon
GTGGTATCTAAAAATGCTGCAATGCTTTCGCTGTGAGCAGTGGTTTCATGAAGCGTGTACGCAGTGCCTACAGGACTCCATGATGTTTGGAGATAG
Seq C2 exon
GTTTTACTTGTTCATTTGTGCGGTGTGCAATAAAGGAGTGGAATACATCAAGCGGCTGGCTCTCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078050-'7-6,'7-5,8-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(15.1=16.0)
A:
PF0062824=PHD=FE(60.4=100)
C2:
PF0062824=PHD=PD(22.6=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATCTGCAGGCCATGAAGC
R:
CCAGCCGCTTGATGTATTCCA
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]