RnoEX6016543 @ rn6
Exon Skipping
Gene
ENSRNOG00000018874 | Phf19
Description
PHD finger protein 19 [Source:RGD Symbol;Acc:1310390]
Coordinates
chr3:13966888-13969451:-
Coord C1 exon
chr3:13969303-13969451
Coord A exon
chr3:13967582-13967677
Coord C2 exon
chr3:13966888-13966956
Length
96 bp
Sequences
Splice sites
3' ss Seq
TAGCTCTTCTGTGCCTCCAGGTG
3' ss Score
8.77
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
AAAGGCGGTGCGCTGAAGAAAGGCGCCATCGCCAAGACGCTGCAGGCAGTGAAAATGGTGCTGTCCTACCAGCCTGAGGAGCTCGATTGGGATTCGCCCCATCGCACCAACCAGCAGCAATGCTACTGCTACTGCGGCGGGCCTGGAGA
Seq A exon
GTGGTACTTACGGATGCTACAGTGCTACCGGTGTAGGCAGTGGTTCCATGAAGCCTGTACACAGTGCCTAAGTGAGCCTATGGTGTTTGGAGACCG
Seq C2 exon
GTTCTACCTGTTCTTCTGCTCCGTGTGTAACCAAGGCCCAGAGTATATCGAGAGGTTGCCCCTGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018874-'5-9,'5-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(15.1=16.0)
A:
PF0062824=PHD=FE(60.4=100)
C2:
PF0062824=PHD=PD(22.6=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGAAAGGCGCCATCG
R:
CTCTGGGCCTTGGTTACACAC
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]