GgaEX0001846 @ galGal4
Exon Skipping
Gene
ENSGALG00000001595 | PHF19
Description
PHD finger protein 19 [Source:HGNC Symbol;Acc:HGNC:24566]
Coordinates
chr17:8290818-8291462:-
Coord C1 exon
chr17:8291314-8291462
Coord A exon
chr17:8290999-8291094
Coord C2 exon
chr17:8290818-8290886
Length
96 bp
Sequences
Splice sites
3' ss Seq
CGGCTCCTCTCCCTCCCCAGGTG
3' ss Score
12.54
5' ss Seq
TCGGTACGT
5' ss Score
10.06
Exon sequences
Seq C1 exon
AAAGGGGGTGCCCTGAAGAAGGGAGCCATTGCCAAGACACTGCAAGCCGTCAAGATGGTGCTGTCCTACAACCCCGACCTGCTGGAGTGGGACTCTCCGCACCGCACCAACCAACAGCAGTGCTACTGCTACTGCGGGGGCCCTGGCGA
Seq A exon
GTGGTACCTGAAGATGCTGCAGTGCTACCGCTGCCGGCAGTGGTTCCATGAGGCGTGCACTCAGTGCCTCAGTGACCCCATGATGTTCGGGGATCG
Seq C2 exon
GTTCTATGTGTTTTTCTGCTCTGTGTGCAACCAGGGACCTGAGTACATCAAGCGCCTGCCCCTGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001595-'9-7,'9-6,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062824=PHD=PU(15.1=16.0)
A:
PF0062824=PHD=FE(60.4=100)
C2:
PF0062824=PHD=PD(22.6=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGCCAAGACACTGCAAGC
R:
GCGCTTGATGTACTCAGGTCC
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]